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1.
Appl Biochem Biotechnol ; 194(1): 99-123, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34822060

ABSTRACT

Lifestyle complications are major health concerns around the globe and are recognized as a major factor for the development of various chronic diseases such as obesity, diabetes, inflammatory bowel diseases, cancer, and cardiac diseases. An unhealthy diet and poor lifestyle impose a serious threat to human health. Numerous studies have suggested the role of human microbiota in human health and diseases. Microbiota resides in the human body symbiotically and the composition of microorganisms is crucial for maintaining the healthy state of an individual. A dysbiotic gut microbiome is responsible for the release of toxic metabolites such as trimethylamine, lipopolysaccharides, bile acids, and uremic toxins and is associated with impaired organ functions. Dietary and herbal intervention of dysbiosis proposes a promising strategy to counteract gut alterations and repairing of the microbial ecosystem and health. The objective of the present comparative study was to observe the effect of therapeutic herbs in gut dysbiosis. In silico studies were performed to identify human microbiota associated with various diseases, ADME, and toxicity properties of phytoconstituents of "Tinospora cordifolia" and "Ocimum sanctum." Furthermore, co-interaction studies were performed to observe the affinity of selected phytochemicals against choline trimethylamine lyase, a critical enzyme involved in dysbiosis-induced human diseases. The antimicrobial potential of phytocompounds was done by the disc diffusion method. In conclusion, our work discusses the herbal intervention of gut dysbiosis and proposes a natural, safe, and effective herbal formulation to correct microbial dysbiosis and associated diseases.


Subject(s)
Dysbiosis , Enzyme Inhibitors , Escherichia coli Proteins/antagonists & inhibitors , Escherichia coli/enzymology , Ocimum sanctum/chemistry , Phytochemicals , Tinospora/chemistry , Animals , Dysbiosis/drug therapy , Dysbiosis/microbiology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Gastrointestinal Microbiome/drug effects , Humans , Lyases/antagonists & inhibitors , Phytochemicals/chemistry , Phytochemicals/pharmacology
2.
PLoS One ; 16(9): e0256863, 2021.
Article in English | MEDLINE | ID: mdl-34492058

ABSTRACT

In both the pharmaceutical and agricultural fields, RNA-based products have capitalized upon the mechanism of RNA interference for targeted reduction of gene expression to improve phenotypes and traits. Reduction in gene expression by RNAi is the result of a small interfering RNA (siRNA) molecule binding to an ARGONAUTE (AGO) protein and directing the effector complex to a homologous region of a target gene's mRNA. siRNAs properties that govern RNA-AGO association have been studied in detail. The siRNA 5' nucleotide (nt) identity has been demonstrated in plants to be an important property responsible for directing association of endogenous small RNAs with different AGO effector proteins. However, it has not been investigated whether the 5' nt identity is an efficacious determinant for topically-applied chemically synthesized siRNAs. In this study, we employed a sandpaper abrasion method to study the silencing efficacies of topically-applied 21 base-pair siRNA duplexes. The MAGNESIUM CHELATASE and GREEN FLUORESCENT PROTEIN genes were selected as endogenous and transgenic gene targets, respectively, to assess the molecular and phenotypic effects of gene silencing. Collections of siRNA variants with different 5' nt identities and different pairing states between the 5' antisense nt and its match in the sense strand of the siRNA duplex were tested for their silencing efficacy. Our results suggest a flexibility in the 5' nt requirement for topically applied siRNA duplexes in planta and highlight the similarity of 5' thermodynamic rules governing topical siRNA efficacy across plants and animals.


Subject(s)
Argonaute Proteins/genetics , Nicotiana/genetics , RNA Interference , RNA, Small Interfering/genetics , Argonaute Proteins/antagonists & inhibitors , Gene Expression Regulation/genetics , Gene Silencing , Green Fluorescent Proteins/antagonists & inhibitors , Green Fluorescent Proteins/genetics , Humans , Lyases/antagonists & inhibitors , Lyases/genetics , Protein Binding/genetics , Nicotiana/growth & development
3.
Sci Rep ; 11(1): 16186, 2021 08 10.
Article in English | MEDLINE | ID: mdl-34376731

ABSTRACT

Cryptomeria japonica (Japanese cedar or sugi) is one of the most important coniferous tree species in Japan and breeding programs for this species have been launched since 1950s. Genome editing technology can be used to shorten the breeding period. In this study, we performed targeted mutagenesis using the CRISPR/Cas9 system in C. japonica. First, the CRISPR/Cas9 system was tested using green fluorescent protein (GFP)-expressing transgenic embryogenic tissue lines. Knock-out efficiency of GFP ranged from 3.1 to 41.4% depending on U6 promoters and target sequences. The GFP knock-out region was mottled in many lines, indicating genome editing in individual cells. However, in 101 of 102 mutated individuals (> 99%) from 6 GFP knock-out lines, embryos had a single mutation pattern. Next, we knocked out the endogenous C. japonica magnesium chelatase subunit I (CjChlI) gene using two guide RNA targets. Green, pale green, and albino phenotypes were obtained in the gene-edited cell lines. Sequence analysis revealed random deletions, insertions, and replacements in the target region. Thus, targeted mutagenesis using the CRISPR/Cas9 system can be used to modify the C. japonica genome.


Subject(s)
CRISPR-Cas Systems , Cryptomeria/genetics , Gene Editing , Lyases/antagonists & inhibitors , Mutagenesis , Mutation , Plants, Genetically Modified/genetics , Cryptomeria/growth & development , Genetic Vectors , Genome, Plant , Japan , Lyases/genetics , Plants, Genetically Modified/growth & development
4.
Chem Biol Drug Des ; 97(2): 231-236, 2021 02.
Article in English | MEDLINE | ID: mdl-32772476

ABSTRACT

The development of gut microbiota-targeted small molecules represents a promising platform for the identification of new therapeutics based on the implication of human gut bacteria with different diseases. Bacterial trimethylamine (TMA)-lyase (CutC) is expressed in gut bacteria and catalyzes the conversion of choline to TMA. The association of elevated TMA production with various disorders has directed research efforts toward identification of CutC inhibitors. Herein, we introduce peptidomimetics as a promising toolbox for the discovery of CutC inhibitors. Our approach starts with screening a library of peptidomimetics for intestinal metabolic stability followed by in vitro CutC inhibition. Compound 5 was identified from this screening platform with IC50 value of 5.9 ± 0.6 µM for CutC inhibition. Unlike previously reported CutC inhibitors, compound 5 possessed universal CutC inhibitory activity in different bacterial strains. Molecular dynamics simulations suggested a plausible binding site and inhibition mechanism for compound 5. Therefore, compound 5 is a promising lead for further structural optimization in the search for CutC-targeted small molecules.


Subject(s)
Bacteria/enzymology , Bacterial Proteins/antagonists & inhibitors , Enzyme Inhibitors/chemistry , Lyases/antagonists & inhibitors , Peptidomimetics/chemistry , Bacteria/isolation & purification , Bacterial Proteins/metabolism , Binding Sites , Desulfovibrio desulfuricans/enzymology , Enzyme Inhibitors/metabolism , Gastrointestinal Microbiome , Humans , Inhibitory Concentration 50 , Kinetics , Lyases/metabolism , Methylamines/metabolism , Molecular Docking Simulation , Peptidomimetics/metabolism
5.
ChemMedChem ; 15(23): 2273-2279, 2020 12 03.
Article in English | MEDLINE | ID: mdl-32827245

ABSTRACT

Anaerobic choline metabolism by human gut microbiota to produce trimethylamine (TMA) has recently evolved as a potential therapeutic target because of its association with chronic kidney disease and increased cardiovascular risks. Limited examples of choline analogues have been reported as inhibitors of bacterial enzyme choline TMA-lyase (CutC), a key enzyme regulating choline anaerobic metabolism. We used a new workflow to discover CutC inhibitors based on focused screening of a diversified library of small molecules for intestinal metabolic stability followed by in vitro CutC inhibitory assay. This workflow identified a histidine-based scaffold as a CutC inhibitor with an IC50 value of 1.9±0.2 µM. Remarkably, the identified CutC inhibitor was able to reduce the production of TMA in whole-cell assays using various bacterial strains as well as in complex gut microbiota environment. The improved efficiency of the new scaffold identified in this study in comparison to previously reported CutC inhibitors would enable optimization of potential leads for in vivo screening and clinical translation. Finally, docking studies and molecular-dynamic simulations were used to predict putative interactions created between inhibitor and CutC.


Subject(s)
Choline/antagonists & inhibitors , Drug Discovery , Enzyme Inhibitors/pharmacology , Gastrointestinal Microbiome/drug effects , Histidine/pharmacology , Lyases/antagonists & inhibitors , Methylamines/antagonists & inhibitors , Choline/metabolism , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemistry , Histidine/chemistry , Humans , Lyases/metabolism , Methylamines/metabolism , Molecular Docking Simulation , Molecular Structure
6.
J Am Heart Assoc ; 9(10): e016223, 2020 05 18.
Article in English | MEDLINE | ID: mdl-32390485

ABSTRACT

Background Patients at increased risk for coronary artery disease and adverse prognosis during heart failure exhibit increased levels of circulating trimethylamine N-oxide (TMAO), a metabolite formed in the metabolism of dietary phosphatidylcholine. We investigated the efficacy of dietary withdrawal of TMAO as well as use of a gut microbe-targeted inhibitor of TMAO production, on cardiac function and structure during heart failure. Methods and Results Male C57BLK/6J mice were fed either control diet, a diet containing TMAO (0.12% wt/wt), a diet containing choline (1% wt/wt), or a diet containing choline (1% wt/wt) plus a microbial choline trimethylamine lyase inhibitor, iodomethylcholine (0.06% wt/wt), starting 3 weeks before transverse aortic constriction. At 6 weeks after transverse aortic constriction, a subset of animals in the TMAO group were switched to a control diet for the remainder of the study. Left ventricular structure and function were monitored at 3-week intervals. Withdrawal of TMAO from the diet attenuated adverse ventricular remodeling and improved cardiac function compared with the TMAO group. Similarly, inhibiting gut microbial conversion of choline to TMAO with a choline trimethylamine lyase inhibitor, iodomethylcholine, improved remodeling and cardiac function compared with the choline-fed group. Conclusions These experimental findings are clinically relevant, and they demonstrate that TMAO levels are modifiable following long-term exposure periods with either dietary withdrawal of TMAO or gut microbial blockade of TMAO generation. Furthermore, these therapeutic strategies to reduce circulating TMAO levels mitigate the negative effects of dietary choline and TMAO in heart failure.


Subject(s)
Bacteria/drug effects , Enzyme Inhibitors/pharmacology , Gastrointestinal Microbiome/drug effects , Heart Failure/drug therapy , Intestines/microbiology , Methylamines/metabolism , Ventricular Function, Left/drug effects , Ventricular Remodeling/drug effects , Animals , Bacteria/enzymology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Choline/metabolism , Disease Models, Animal , Down-Regulation , Fibrosis , Heart Failure/microbiology , Heart Failure/pathology , Heart Failure/physiopathology , Lyases/antagonists & inhibitors , Lyases/metabolism , Male , Mice, Inbred C57BL , Myocardium/pathology
7.
Arterioscler Thromb Vasc Biol ; 40(5): 1239-1255, 2020 05.
Article in English | MEDLINE | ID: mdl-32212854

ABSTRACT

OBJECTIVE: Gut microbial metabolism of dietary choline, a nutrient abundant in a Western diet, produces trimethylamine (TMA) and the atherothrombosis- and fibrosis-promoting metabolite TMA-N-oxide (TMAO). Recent clinical and animal studies reveal that elevated TMAO levels are associated with heightened risks for both cardiovascular disease and incident chronic kidney disease development. Despite this, studies focusing on therapeutically targeting gut microbiota-dependent TMAO production and its impact on preserving renal function are limited. Approach and Results: Herein we examined the impact of pharmacological inhibition of choline diet-induced gut microbiota-dependent production of TMA, and consequently TMAO, on renal tubulointerstitial fibrosis and functional impairment in a model of chronic kidney disease. Initial studies with a gut microbial choline TMA-lyase mechanism-based inhibitor, iodomethylcholine, confirmed both marked suppression of TMA generation, and consequently TMAO levels, and selective targeting of the gut microbial compartment (ie, both accumulation of the drug in intestinal microbes and limited systemic exposure in the host). Dietary supplementation of either choline or TMAO significantly augmented multiple indices of renal functional impairment and fibrosis associated with chronic subcutaneous infusion of isoproterenol. However, the presence of the gut microbiota-targeting inhibitor iodomethylcholine blocked choline diet-induced elevation in TMAO, and both significantly improved decline in renal function, and significantly attenuated multiple indices of tubulointerstitial fibrosis. Iodomethylcholine treatment also reversed many choline diet-induced changes in cecal microbial community composition associated with TMAO and renal functional impairment. CONCLUSIONS: Selective targeting of gut microbiota-dependent TMAO generation may prevent adverse renal structural and functional alterations in subjects at risk for chronic kidney disease.


Subject(s)
Bacteria/drug effects , Bacterial Proteins/antagonists & inhibitors , Choline/pharmacology , Enzyme Inhibitors/pharmacology , Gastrointestinal Microbiome/drug effects , Kidney/drug effects , Lyases/antagonists & inhibitors , Methylamines/metabolism , Renal Insufficiency, Chronic/drug therapy , Animals , Bacteria/enzymology , Bacterial Proteins/metabolism , Choline/analogs & derivatives , Disease Models, Animal , Fibrosis , Kidney/metabolism , Kidney/pathology , Kidney/physiopathology , Lyases/metabolism , Male , Mice, Inbred C57BL , Renal Insufficiency, Chronic/metabolism , Renal Insufficiency, Chronic/microbiology , Renal Insufficiency, Chronic/pathology
8.
Article in English | MEDLINE | ID: mdl-32117061

ABSTRACT

Increased rates of locoregional recurrence (LR) have been observed in triple negative breast cancer (TNBC) despite multimodality therapy, including radiation (RT). Recent data suggest inhibiting the androgen receptor (AR) may be an effective radiosensitizing strategy, and AR is expressed in 15-35% of TNBC tumors. The aim of this study was to determine whether seviteronel (INO-464), a novel CYP17 lyase inhibitor and AR antagonist, is able to radiosensitize AR-positive (AR+) TNBC models. In cell viability assays, seviteronel and enzalutamide exhibited limited effect as a single agent (IC50 > 10 µM). Using clonogenic survival assays, however, AR knockdown and AR inhibition with seviteronel were effective at radiosensitizing cells with radiation enhancement ratios of 1.20-1.89 in models of TNBC with high AR expression. AR-negative (AR-) models, regardless of their estrogen receptor expression, were not radiosensitized with seviteronel treatment at concentrations up to 5 µM. Radiosensitization of AR+ TNBC models was at least partially dependent on impaired dsDNA break repair with significant delays in repair at 6, 16, and 24 h as measured by immunofluorescent staining of γH2AX foci. Similar effects were observed in an in vivo AR+ TNBC xenograft model where there was a significant reduction in tumor volume and a delay to tumor doubling and tripling times in mice treated with seviteronel and radiation. Following combination treatment with seviteronel and radiation, increased binding of AR occurred at DNA damage response genes, including genes involved both in homologous recombination and non-homologous end joining. This trend was not observed with combination treatment of enzalutamide and RT, suggesting that seviteronel may have a different mechanism of radiosensitization compared to other AR inhibitors. Enzalutamide and seviteronel treatment also had different effects on AR and AR target genes as measured by immunoblot and qPCR. These results implicate AR as a mediator of radioresistance in AR+ TNBC models and support the use of seviteronel as a radiosensitizing agent in AR+ TNBC.


Subject(s)
Androgen Receptor Antagonists/pharmacology , Enzyme Inhibitors/pharmacology , Naphthalenes/pharmacology , Radiation-Sensitizing Agents/pharmacology , Steroid 17-alpha-Hydroxylase/antagonists & inhibitors , Triazoles/pharmacology , Triple Negative Breast Neoplasms/radiotherapy , Animals , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Benzamides , Cell Line, Tumor , Female , Humans , Lyases/antagonists & inhibitors , MCF-7 Cells , Mice , Mice, Inbred C57BL , Mice, SCID , Nitriles , Phenylthiohydantoin/administration & dosage , Phenylthiohydantoin/analogs & derivatives , Radiation Tolerance/drug effects , Receptors, Androgen/genetics , Receptors, Androgen/metabolism , Triple Negative Breast Neoplasms/drug therapy , Triple Negative Breast Neoplasms/genetics , Triple Negative Breast Neoplasms/pathology , Xenograft Model Antitumor Assays
9.
Br J Pharmacol ; 176 Suppl 1: S297-S396, 2019 12.
Article in English | MEDLINE | ID: mdl-31710714

ABSTRACT

The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/10.1111/bph.14752. Enzymes are one of the six major pharmacological targets into which the Guide is divided, with the others being: G protein-coupled receptors, ion channels, nuclear hormone receptors, catalytic receptors and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2019, and supersedes data presented in the 2017/18, 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the International Union of Basic and Clinical Pharmacology Committee on Receptor Nomenclature and Drug Classification (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.


Subject(s)
Enzyme Inhibitors/pharmacology , Hydrolases/antagonists & inhibitors , Isomerases/antagonists & inhibitors , Ligases/antagonists & inhibitors , Lyases/antagonists & inhibitors , Oxidoreductases/antagonists & inhibitors , Transferases/antagonists & inhibitors , Animals , Databases, Pharmaceutical , Enzyme Inhibitors/chemistry , Humans , Hydrolases/chemistry , Hydrolases/metabolism , Isomerases/chemistry , Isomerases/metabolism , Ligands , Ligases/chemistry , Ligases/metabolism , Lyases/chemistry , Lyases/metabolism , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Transferases/chemistry , Transferases/metabolism
10.
Proteomics ; 19(21-22): e1800451, 2019 11.
Article in English | MEDLINE | ID: mdl-31231915

ABSTRACT

The targeting of glutamine metabolism specifically via pharmacological inhibition of glutaminase 1 (GLS1) has been translated into clinical trials as a novel therapy for several cancers. The results, though encouraging, show room for improvement in terms of tumor reduction. In this study, the glutaminase II pathway is found to be upregulated for glutamate production upon GLS1 inhibition in pancreatic tumors. Moreover, genetic suppression of glutamine transaminase K (GTK), a key enzyme of the glutaminase II pathway, leads to the complete inhibition of pancreatic tumorigenesis in vivo unveiling GTK as a new metabolic target for cancer therapy. These results suggest that current trials using GLS1 inhibition as a therapeutic approach targeting glutamine metabolism in cancer should take into account the upregulation of other metabolic pathways that can lead to glutamate production; one such pathway is the glutaminase II pathway via GTK.


Subject(s)
Enzyme Inhibitors/pharmacology , Glutaminase/genetics , Lyases/genetics , Pancreatic Neoplasms/drug therapy , Transaminases/genetics , Cell Line, Tumor , Cell Proliferation/drug effects , Gene Expression Regulation, Neoplastic/drug effects , Glutamic Acid/metabolism , Glutaminase/antagonists & inhibitors , Glutamine/genetics , Glutamine/metabolism , Humans , Lyases/antagonists & inhibitors , Metabolic Networks and Pathways/drug effects , Pancreatic Neoplasms/genetics , Pancreatic Neoplasms/metabolism , Transaminases/antagonists & inhibitors
11.
SLAS Discov ; 24(7): 766-777, 2019 08.
Article in English | MEDLINE | ID: mdl-31059309

ABSTRACT

Microbial-dependent trimethylamine (TMA) generation from dietary precursors such as choline was recently linked to cardiovascular diseases (CVDs) as well as chronic kidney disease (CKD). Inhibition of TMA-generating enzymes in gut bacteria would be an innovative approach to treat these diseases. The potential to accurately quantify secreted TMA levels highlights the capacity of mass spectrometry (MS) for tracking microbial TMA-lyase activity. However, high-throughput screening (HTS) by conventional MS instrumentation is hampered by limited sample throughput. Recent advancement in liquid handling and instrumentation of matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) MS provides an HTS-compatible MS technology. The deciphering of enzymatic reactions using this label-free readout has been successfully applied but has thus far been limited to peptide/protein-centric activity assays. Here, we demonstrate the versatile applicability of MALDI-TOF by tracking a small molecule within a highly complex sample background. The key to success for this concept was chemical derivatization of the target molecule enabling quantitative assessment of microbial TMA formation. Further, its potential was demonstrated in a side-by-side comparison to RapidFire-MS in a primary screen and subsequent dose-response experiments. Overall, the established assay enables the screening for microbial TMA-lyase inhibitors and serves as a proof of concept for the applicability of MALDI-TOF for demanding assay concepts per se.


Subject(s)
Drug Discovery/methods , Enzyme Inhibitors/pharmacology , High-Throughput Screening Assays , Lyases/antagonists & inhibitors , Methylamines/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Humans
12.
J Enzyme Inhib Med Chem ; 34(1): 823-828, 2019 Dec.
Article in English | MEDLINE | ID: mdl-30889995

ABSTRACT

Starting from the analysis of the hypothetical binding mode of our previous furan-based hit (I), we successfully achieved our objective to replace the nitro moiety, leading to the disclosure of a new lead exhibiting a strong activity against MbtI. Our best candidate 1 h displayed a Ki of 8.8 µM and its antimycobacterial activity (MIC99 = 250 µM) is conceivably related to mycobactin biosynthesis inhibition. These results support the hypothesis that 5-phenylfuran-2-carboxylic derivatives are a promising class of MbtI inhibitors.


Subject(s)
Antitubercular Agents/chemistry , Antitubercular Agents/pharmacology , Enzyme Inhibitors/pharmacology , Furans/chemistry , Lyases/antagonists & inhibitors , Binding Sites , Enzyme Inhibitors/chemistry , Lyases/chemistry , Microbial Sensitivity Tests , Molecular Docking Simulation , Mycobacterium bovis/drug effects , Structure-Activity Relationship
13.
Eur J Med Chem ; 155: 754-763, 2018 Jul 15.
Article in English | MEDLINE | ID: mdl-29940465

ABSTRACT

We report on the virtual screening, synthesis, and biological evaluation of new furan derivatives targeting Mycobacterium tuberculosis salicylate synthase (MbtI). A receptor-based virtual screening procedure was applied to screen the Enamine database, identifying two compounds, I and III, endowed with a good enzyme inhibitory activity. Considering the most active compound I as starting point for the development of novel MbtI inhibitors, we obtained new derivatives based on the furan scaffold. Among the SAR performed on this class, compound 1a emerged as the most potent MbtI inhibitor reported to date (Ki = 5.3 µM). Moreover, compound 1a showed a promising antimycobacterial activity (MIC99 = 156 µM), which is conceivably related to mycobactin biosynthesis inhibition.


Subject(s)
Antitubercular Agents/pharmacology , Drug Discovery , Enzyme Inhibitors/pharmacology , Lyases/antagonists & inhibitors , Mycobacterium tuberculosis/drug effects , Antitubercular Agents/chemical synthesis , Antitubercular Agents/chemistry , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Lyases/metabolism , Microbial Sensitivity Tests , Models, Molecular , Molecular Structure , Mycobacterium tuberculosis/enzymology , Structure-Activity Relationship
14.
Molecules ; 23(7)2018 06 21.
Article in English | MEDLINE | ID: mdl-29933627

ABSTRACT

Tuberculosis is the leading cause of death from a single infectious agent worldwide; therefore, the need for new antitubercular drugs is desperate. The recently validated target salicylate synthase MbtI is the first enzyme involved in the biosynthesis of mycobactins, compounds able to chelate iron, an essential cofactor for the survival of Mycobacterium tuberculosis in the host. Here, we report on the synthesis and biological evaluation of chromane-based compounds as new potential inhibitors of MbtI. Our approach successfully allowed the identification of a novel lead compound (1), endowed with a promising activity against this enzyme (IC50 = 55 µM). Molecular modeling studies were performed in order to evaluate the binding mode of 1 and rationalize the preliminary structure-activity relationships, thus providing crucial information to carry out further optimization studies.


Subject(s)
Antitubercular Agents/chemistry , Bacterial Proteins/antagonists & inhibitors , Chorismic Acid/chemistry , Chromans/chemistry , Enzyme Inhibitors/chemistry , Lyases/antagonists & inhibitors , Mycobacterium tuberculosis/chemistry , Amino Acid Motifs , Antitubercular Agents/chemical synthesis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Catalytic Domain , Chorismic Acid/metabolism , Chromans/chemical synthesis , Enzyme Inhibitors/chemical synthesis , Gene Expression , Kinetics , Lyases/chemistry , Lyases/genetics , Lyases/metabolism , Molecular Docking Simulation , Mycobacterium tuberculosis/enzymology , Protein Binding , Protein Interaction Domains and Motifs , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Structure-Activity Relationship , Substrate Specificity , Thermodynamics
15.
Steroids ; 135: 79-91, 2018 07.
Article in English | MEDLINE | ID: mdl-29577953

ABSTRACT

The regioselective Cu(I)-catalyzed 1,3-dipolar cycloaddition of 17α- and 17ß-azidoandrost-5-en-3ß-ol epimers (3b and 5b) with different terminal alkynes afforded novel 1,4-substituted triazolyl derivatives (8a-k and 9a-k). For the preparation of 5'-iodo-1',2',3'-triazoles (8m-n and 9m-n), an improved method was developed, directly from steroidal azides and terminal alkynes, in reaction mediated by CuI and ICl as iodinating agents. Acetolysis and subsequent hydrolysis of 8n and 9n yielded 5'-hydroxy-1',2',3'-triazoles 8o and 9o. The inhibitory effect of 8a-o, 9a-o, 3, and 5 on rat testicular C17,20-lyase was investigated by means of an in vitro radioincubation technique. The results revealed that the C-17 epimers of steroidal triazoles influence the C17,20-lyase effect. Inhibitors were found only in the 17α-triazolyl series (8a-o), whereas in the C-17 azide pair the 17ß compound (5b) was more potent.


Subject(s)
Alkynes/chemistry , Androstenols/chemical synthesis , Androstenols/pharmacology , Azides/chemistry , Copper/chemistry , Lyases/antagonists & inhibitors , Steroid 17-alpha-Hydroxylase/antagonists & inhibitors , Androstenols/chemistry , Catalysis , Cycloaddition Reaction , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Models, Molecular , Molecular Conformation , Stereoisomerism , Triazoles/chemistry
16.
Am J Physiol Renal Physiol ; 314(6): F1077-F1086, 2018 06 01.
Article in English | MEDLINE | ID: mdl-29357418

ABSTRACT

Bladder pain is a prominent symptom of interstitial cystitis/painful bladder syndrome. Hydrogen sulfide (H2S) generated by cystathionine ß-synthase (CBS) or cystathionine γ-lyase (CSE) facilitates bladder hypersensitivity. We assessed involvement of the H2S pathway in protease-activated receptor 4 (PAR4)-induced bladder pain. A bladder pain model was induced by intravesical instillation of PAR4-activating peptide in mice. The role of H2S in this model was evaluated by intraperitoneal preadministration of d,l-propargylglycine (PAG), aminooxyacetic acid (AOAA), or S-adenosylmethionine or the preintravesical administration of NaHS. SV-HUC-1 cells were treated in similar manners. Assessments of CBS, CSE, and macrophage migration inhibitory factor (MIF) expression, bladder voiding function, bladder inflammation, H2S production, and referred bladder pain were performed. The CSE and CBS pathways existed in both mouse bladders and SV-HUC-1 cells. H2S signaling was upregulated in PAR4-induced bladder pain models, and H2S-generating enzyme activity was upregulated in human bladders, mouse bladders, and SV-HUC-1 cells. Pretreatment with AOAA or NaHS inhibited or promoted PAR4-induced mechanical hyperalgesia, respectively; however, PAG only partially inhibited PAR4-induced bladder pain. Treatment with PAG or AOAA decreased H2S production in both mouse bladders and SV-HUC-1 cells. Pretreatment with AOAA increased MIF protein levels in bladder tissues and cells, whereas pretreatment with NaHS lowered MIF protein levels. Bladder pain triggered by the H2S pathway was not accompanied by inflammation or altered micturition behavior. Thus endogenous H2S generated by CBS or CSE caused referred hyperalgesia mediated through MIF in mice with PAR4-induced bladder pain, without causing bladder injury or altering micturition behavior.


Subject(s)
Cystitis, Interstitial/metabolism , Hydrogen Sulfide/metabolism , Hyperalgesia/metabolism , Pain Threshold , Receptors, Thrombin/metabolism , Urinary Bladder/metabolism , Alkynes/pharmacology , Aminooxyacetic Acid/pharmacology , Analgesics/pharmacology , Animals , Cell Line , Cystathionine gamma-Lyase/antagonists & inhibitors , Cystathionine gamma-Lyase/metabolism , Cystitis, Interstitial/pathology , Cystitis, Interstitial/physiopathology , Cystitis, Interstitial/prevention & control , Disease Models, Animal , Enzyme Inhibitors/pharmacology , Female , Glycine/analogs & derivatives , Glycine/pharmacology , Humans , Hyperalgesia/pathology , Hyperalgesia/physiopathology , Hyperalgesia/prevention & control , Intramolecular Oxidoreductases/metabolism , Ligands , Lyases/antagonists & inhibitors , Lyases/metabolism , Macrophage Migration-Inhibitory Factors/metabolism , Mice, Inbred C57BL , Pain Threshold/drug effects , Signal Transduction , Sulfides/pharmacology , Urinary Bladder/drug effects , Urinary Bladder/pathology , Urinary Bladder/physiopathology
17.
Steroids ; 123: 61-66, 2017 07.
Article in English | MEDLINE | ID: mdl-28502863

ABSTRACT

Aza-Michael addition of 16-dehydropregnenolone was studied in the presence of a basic ionic liquid, [DBU][OAc] as catalyst and solvent. The reaction was carried out using different primary and secondary amines as N-nucleophiles. The products were obtained in moderate to good yields and were characterized by 1H and 13C NMR, MS and IR. The ionic liquid was found to be an efficient and recyclable catalyst that was reused five times. The products were investigated for the inhibition of in vitro C17,20-lyase activity and displayed moderate inhibitory effect.


Subject(s)
Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Ionic Liquids/chemistry , Lyases/antagonists & inhibitors , Pregnenolone/chemical synthesis , Pregnenolone/pharmacology , Animals , Catalysis , Chemistry Techniques, Synthetic , Enzyme Inhibitors/chemistry , Models, Molecular , Molecular Conformation , Pregnenolone/analogs & derivatives , Pregnenolone/chemistry , Rats
18.
J Org Chem ; 82(7): 3432-3440, 2017 04 07.
Article in English | MEDLINE | ID: mdl-28282140

ABSTRACT

In order to survive in a mammalian host, Mycobacterium tuberculosis (Mtb) produces aryl-capped siderophores known as the mycobactins for iron acquisition. Salicylic acid is a key building block of the mycobactin core and is synthesized by the bifunctional enzyme MbtI, which converts chorismate into isochorismate via a SN2″ reaction followed by further transformation into salicylate through a [3,3]-sigmatropic rearrangement. MbtI belongs to a family of chorismate-utilizing enzymes (CUEs) that have conserved topology and active site residues. The transition-state inhibitor 1 described by Bartlett, Kozlowski, and co-workers is the most potent reported inhibitor to date of CUEs. Herein, we disclose a concise asymmetric synthesis and the accompanying biochemical characterization of 1 along with three closely related analogues beginning from bromobenzene cis-1S,2S-dihydrodiol produced through microbial oxidation that features a series of regio- and stereoselective transformations for introduction of the C-4 hydroxy and C-6 amino substituents. The flexible synthesis enables late-stage introduction of the carboxy group and other bioisosteres at the C-1 position as well as installation of the enol-pyruvate side chain at the C-5 position.


Subject(s)
Bromobenzenes/pharmacology , Cyclohexenes/pharmacology , Enzyme Inhibitors/pharmacology , Lyases/antagonists & inhibitors , Mycobacterium tuberculosis/enzymology , Bromobenzenes/chemical synthesis , Bromobenzenes/chemistry , Cyclohexenes/chemical synthesis , Cyclohexenes/chemistry , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Lyases/metabolism , Molecular Structure , Structure-Activity Relationship
19.
Arch Microbiol ; 199(5): 787-798, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28283681

ABSTRACT

Plant responses to the environment and microorganisms, including arbuscular mycorrhizal fungi, involve complex hormonal interactions. It is known that abscisic acid (ABA) and ethylene may be involved in the regulation of arbuscular mycorrhiza (AM) and that part of the detrimental effects of ABA deficiency in plants is due to ethylene overproduction. In this study, we aimed to determine whether the low susceptibility to mycorrhizal colonization in ABA-deficient mutants is due to high levels of ethylene and whether AM development is associated with changes in the steady-state levels of transcripts of genes involved in the biosynthesis of ethylene and ABA. For that, tomato (Solanum lycopersicum) ethylene overproducer epinastic (epi) mutant and the ABA-deficient notabilis (not) and sitiens (sit) mutants, in the same Micro-Tom (MT) genetic background, were inoculated with Rhizophagus clarus, and treated with the ethylene biosynthesis inhibitor aminoethoxyvinylglycine (AVG). The development of AM, as well as the steady-state levels of transcripts involved in ethylene (LeACS2, LeACO1 and LeACO4) and ABA (LeNCED) biosynthesis, was determined. The intraradical colonization in epi, not and sit mutants was significantly reduced compared to MT. The epi mutant completely restored the mycorrhizal colonization to the levels of MT with the application of 10 µM of AVG, probably due to the inhibition of the ACC synthase gene expression. The steady-state levels of LeACS2 and LeACO4 transcripts were induced in mycorrhizal roots of MT, whereas the steady-state levels of LeACO1 and LeACO4 transcripts were significantly induced in sit, and the steady-state levels of LeNCED transcripts were significantly induced in all genotypes and in mycorrhizal roots of epi mutants treated with AVG. The reduced mycorrhizal colonization in sit mutants seems not to be limited by ethylene production via ACC oxidase regulation. Both ethylene overproduction and ABA deficiency impaired AM fungal colonization in tomato roots, indicating that, besides hormonal interactions, a fine-tuning of each hormone level is required for AM development.


Subject(s)
Abscisic Acid/metabolism , Ethylenes/metabolism , Fungi/growth & development , Mycorrhizae/growth & development , Solanum lycopersicum/metabolism , Abscisic Acid/biosynthesis , Amino Acid Oxidoreductases/antagonists & inhibitors , Ethylenes/biosynthesis , Glycine/analogs & derivatives , Glycine/pharmacology , Lyases/antagonists & inhibitors , Solanum lycopersicum/genetics , Solanum lycopersicum/microbiology , Mycorrhizae/metabolism , Plant Roots/microbiology
20.
Pharmacol Res ; 111: 283-289, 2016 09.
Article in English | MEDLINE | ID: mdl-27326921

ABSTRACT

Sildenafil, a selective phosphodiesterase type 5 (PDE5) inhibitor, commonly used in the oral treatment for erectile dysfunction, relaxes smooth muscle of human bladder through the activation of hydrogen sulfide (H2S) signaling. H2S is an endogenous gaseous transmitter with myorelaxant properties predominantly formed from l-cysteine (l-Cys) by cystathionine-ß-synthase (CBS) and cystathionine-γ-lyase (CSE). Sildenafil also relaxes rat and human myometrium during preterm labor but the underlying mechanism is still unclear. In the present study we investigated the possible involvement of H2S as a mediator of sildenafil-induced effect in uterine mouse contractility. We firstly demonstrated that both enzymes, CBS and CSE were expressed, and able to convert l-Cys into H2S in mouse uterus. Thereafter, sildenafil significantly increased H2S production in mouse uterus and this effect was abrogated by CBS or CSE inhibition. In parallel, l-Cys, sodium hydrogen sulfide or sildenafil but not d-Cys reduced spontaneous uterus contractility in a functional study. The blockage of CBS and CSE reduced this latter effect even if a major role for CSE than CBS was observed. This data was strongly confirmed by using CSE(-/-) mice. Indeed, the increase in H2S production mediated by l-Cys or by sildenafil was not found in CSE(-/-) mice. Besides, the effect of H2S or sildenafil on spontaneous contractility was reduced in CSE(-/-) mice. A decisive proof for the involvement of H2S signaling in sildenafil effect in mice uterus was given by the measurement of cGMP. Sildenafil increased cGMP level that was significantly reduced by CSE inhibition. In conclusion, l-Cys/CSE/H2S signaling modulates the mouse uterus motility and the sildenafil effect. Therefore the study may open different therapeutical approaches for the management of the uterus abnormal contractility disorders.


Subject(s)
Cystathionine gamma-Lyase/metabolism , Cysteine/metabolism , Phosphodiesterase 5 Inhibitors/pharmacology , Signal Transduction/drug effects , Sildenafil Citrate/pharmacology , Sulfites/metabolism , Uterine Contraction/drug effects , Uterus/drug effects , Animals , Cyclic GMP/metabolism , Cystathionine gamma-Lyase/antagonists & inhibitors , Cystathionine gamma-Lyase/genetics , Dose-Response Relationship, Drug , Enzyme Inhibitors/pharmacology , Female , Genotype , In Vitro Techniques , Lyases/antagonists & inhibitors , Lyases/metabolism , Mice, Knockout , Phenotype , Uterus/enzymology
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